Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr11:24719058-24719860	SK-N-SH	brain:	n/a	n/a
2	SETDB1	chr11:24719361-24719883	U2OS	brain:	n/a	n/a
3	KAP1	chr11:24719383-24719754	U2OS	brain:	n/a	n/a
4	CEBPB	chr11:24718959-24719791	Hela-S3	cervix:	n/a	n/a
5	PBX3	chr11:24719047-24719766	SK-N-SH	brain:	n/a	n/a
6	FOSL2	chr11:24719155-24719808	SK-N-SH	brain:	n/a	n/a
7	GATA3	chr11:24719000-24719911	SK-N-SH	brain:	n/a	n/a
8	GATA3	chr11:24718877-24719962	SK-N-SH	brain:	n/a	n/a
9	SMC3	chr11:24719108-24719758	Hela-S3	cervix:	n/a	n/a
10	RCOR1	chr11:24719135-24719772	Hela-S3	cervix:	n/a	n/a
11	USF2	chr11:24719294-24719788	Hela-S3	cervix:	n/a	n/a
12	JUN	chr11:24718841-24719796	Hela-S3	cervix:	n/a	n/a
13	POLR2A	chr11:24719202-24719745	HUVEC	blood vessel:	n/a	n/a
14	JUND	chr11:24719155-24719875	Hela-S3	cervix:	n/a	n/a
15	GATA2	chr11:24718951-24719908	HUVEC	blood vessel:	n/a	n/a
16	RAD21	chr11:24719074-24719767	Hela-S3	cervix:	n/a	n/a
17	ZNF143	chr11:24719471-24719757	Hela-S3	cervix:	n/a	n/a
18	BRCA1	chr11:24719060-24719757	Hela-S3	cervix:	n/a	n/a
19	FOS	chr11:24719212-24719797	HUVEC	blood vessel:	n/a	n/a
20	EP300	chr11:24718983-24719789	SK-N-SH	brain:	n/a	n/a
21	EP300	chr11:24719088-24719871	Hela-S3	cervix:	n/a	n/a
22	KAP1	chr11:24719198-24719853	HEK293	kidney:	n/a	n/a
23	JUND	chr11:24719143-24719794	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000255489	TF binding region

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10834433	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11028110	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364048	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7952079	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055026	chr11:24151133-24737122	Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1037744	chr11:24174588-24737122	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv897093	chr11:24675207-24736493	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1052730	chr11:24695821-25272497	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1053055	chr11:24700012-25293551	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:24717600-24719800	Enhancers	Hela-S3	cervix
2	chr11:24719000-24719800	Enhancers	HUVEC	blood vessel
3	chr11:24719000-24719800	Enhancers	NH-A	brain

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