Variant report

Variant	rs12365975
Chromosome Location	chr11:108999117-108999118
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12797437	1.00[JPT][hapmap]
rs1509721	1.00[ASN][1000 genomes]
rs56209429	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv898390	chr11:108893765-109003536	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108992600-109000600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:108995200-109001200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr11:108995400-109002800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:108995400-109003000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:108995400-109003200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:108995600-109002000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:108995600-109003200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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