Variant report

Variant	rs1509721
Chromosome Location	chr11:108998442-108998443
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12365975	1.00[ASN][1000 genomes]
rs12800678	0.82[EUR][1000 genomes]
rs12801760	0.82[EUR][1000 genomes]
rs12807207	0.82[EUR][1000 genomes]
rs12808035	0.82[EUR][1000 genomes]
rs17109182	0.89[AFR][1000 genomes]
rs17109190	0.94[AFR][1000 genomes]
rs17633182	0.82[EUR][1000 genomes]
rs17633211	0.82[EUR][1000 genomes]
rs17633229	0.82[EUR][1000 genomes]
rs17633258	0.82[EUR][1000 genomes]
rs17706358	0.82[EUR][1000 genomes]
rs1876858	0.82[EUR][1000 genomes]
rs2136537	0.82[EUR][1000 genomes]
rs34930115	0.82[EUR][1000 genomes]
rs35540887	0.82[EUR][1000 genomes]
rs4082792	0.82[EUR][1000 genomes]
rs56209429	1.00[ASN][1000 genomes]
rs7938477	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv898390	chr11:108893765-109003536	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108992600-109000600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:108995200-109001200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr11:108995400-109002800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:108995400-109003000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:108995400-109003200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:108995600-109002000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:108995600-109003200	Weak transcription	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links