Variant report

Variant	rs12371881
Chromosome Location	chr12:117529032-117529033
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:117522745..117531514-chr12:117533680..117541602,11	K562	blood:
2	chr12:117517303..117519421-chr12:117527171..117531025,3	K562	blood:
3	chr12:117521637..117523408-chr12:117528244..117530881,2	MCF-7	breast:
4	chr12:117488907..117491503-chr12:117528799..117530966,2	K562	blood:

Variant related genes	Relation type
ENSG00000088992	Chromatin interaction
ENSG00000258285	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10850758	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11068326	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56095597	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7134364	0.88[EUR][1000 genomes]
rs7316090	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7955979	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117515200-117535200	Weak transcription	Primary T cells from cord blood	blood
2	chr12:117521600-117530400	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr12:117525400-117530800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:117527400-117533200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr12:117528000-117529200	Enhancers	Fetal Kidney	kidney
6	chr12:117528200-117534600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr12:117528400-117529200	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr12:117528400-117529600	Enhancers	Liver	Liver
9	chr12:117528400-117529800	Enhancers	Duodenum Mucosa	Duodenum
10	chr12:117528400-117531400	Enhancers	Stomach Mucosa	stomach
11	chr12:117528400-117534600	Enhancers	Pancreas	Pancrea
12	chr12:117528600-117529200	Enhancers	Fetal Intestine Large	intestine
13	chr12:117528600-117529400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr12:117528600-117529400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
15	chr12:117528600-117529600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr12:117528600-117529600	Enhancers	Fetal Intestine Small	intestine
17	chr12:117528600-117529800	Enhancers	Left Ventricle	heart
18	chr12:117528600-117530000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr12:117528600-117530000	Enhancers	K562	blood
20	chr12:117528600-117530200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr12:117528600-117530200	Enhancers	Right Ventricle	heart
22	chr12:117528800-117529200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr12:117528800-117529400	Enhancers	Fetal Heart	heart
24	chr12:117528800-117529400	Enhancers	Fetal Lung	lung
25	chr12:117528800-117529400	Weak transcription	Lung	lung
26	chr12:117528800-117529600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr12:117528800-117529600	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr12:117528800-117529800	Weak transcription	Gastric	stomach
29	chr12:117528800-117536000	Weak transcription	Right Atrium	heart
30	chr12:117529000-117529400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr12:117529000-117530000	Genic enhancers	A549	lung
32	chr12:117529000-117530000	Flanking Active TSS	HepG2	liver
33	chr12:117529000-117530800	Weak transcription	Dnd41	blood

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