Variant report

Variant	rs7316090
Chromosome Location	chr12:117521368-117521369
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:117520699..117522786-chr12:117526190..117528130,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10744888	0.80[CEU][hapmap]
rs11068326	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11615600	0.89[CEU][hapmap]
rs12371881	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2062529	0.83[CEU][hapmap]
rs2291910	0.89[CEU][hapmap]
rs56095597	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7134364	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7955979	1.00[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7960239	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1804583	chr12:117472107-117525169	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117499000-117522000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr12:117508200-117523200	Weak transcription	Brain Hippocampus Middle	brain
3	chr12:117515000-117524800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr12:117515200-117521400	Weak transcription	Stomach Mucosa	stomach
5	chr12:117515200-117522400	Weak transcription	Brain Anterior Caudate	brain
6	chr12:117515200-117535200	Weak transcription	Primary T cells from cord blood	blood
7	chr12:117515400-117523000	Weak transcription	Gastric	stomach
8	chr12:117515400-117526400	Weak transcription	Spleen	Spleen
9	chr12:117515400-117528600	Weak transcription	K562	blood
10	chr12:117515600-117522200	Weak transcription	Right Ventricle	heart
11	chr12:117518800-117522400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr12:117519000-117522200	Weak transcription	Left Ventricle	heart
13	chr12:117519200-117522200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr12:117520200-117524000	Enhancers	Fetal Heart	heart
15	chr12:117520800-117521600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
16	chr12:117520800-117521600	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr12:117520800-117524000	Enhancers	Pancreas	Pancrea
18	chr12:117520800-117526200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr12:117521000-117521400	Strong transcription	A549	lung
20	chr12:117521000-117521600	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr12:117521000-117522400	Genic enhancers	HepG2	liver
22	chr12:117521000-117527000	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr12:117521200-117521400	Enhancers	Fetal Lung	lung
24	chr12:117521200-117521400	Genic enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links