Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10502496	0.99[ASN][1000 genomes]
rs10853676	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11875594	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12232680	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12456185	0.99[ASN][1000 genomes]
rs12604309	0.89[ASN][1000 genomes]
rs16943868	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16943900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16943909	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16943911	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16943923	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3949053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4476253	0.89[ASN][1000 genomes]
rs4630632	0.89[ASN][1000 genomes]
rs59338338	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62080946	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62100680	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs888292	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs948306	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9951183	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1061993	chr18:25211720-25239455	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1067348	chr18:25213808-25239455	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv833604	chr18:25226727-25417423	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25228600-25230200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr18:25228600-25230200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr18:25229000-25230000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr18:25229200-25230000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr18:25229400-25230000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr18:25229400-25230000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr18:25229600-25230000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr18:25229600-25230200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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