Variant report
| Variant | rs3949053 |
|---|---|
| Chromosome Location | chr18:25223439-25223440 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10502496 | 0.91[ASN][1000 genomes] |
| rs10853676 | 0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11875594 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12232680 | 0.80[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12373320 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12456185 | 0.91[ASN][1000 genomes] |
| rs12604309 | 0.82[ASN][1000 genomes] |
| rs16943868 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs16943900 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs16943909 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs16943911 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs16943923 | 0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4476253 | 0.82[ASN][1000 genomes] |
| rs4630632 | 0.82[ASN][1000 genomes] |
| rs59338338 | 0.80[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs62080946 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs62100680 | 0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs888292 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs948306 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs9951183 | 0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2761996 | chr18:24866083-25818618 | Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv1061993 | chr18:25211720-25239455 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv1067348 | chr18:25213808-25239455 | Weak transcription Enhancers Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:25223000-25225000 | Enhancers | Fetal Heart | heart |
