Variant report

Variant	rs12376729
Chromosome Location	chr9:26116157-26116158
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10757596	0.86[EUR][1000 genomes]
rs10812346	0.92[EUR][1000 genomes]
rs10812347	0.92[EUR][1000 genomes]
rs10812348	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10812350	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10967191	0.92[EUR][1000 genomes]
rs12156571	0.92[EUR][1000 genomes]
rs35648726	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015883	chr9:25633359-26315286	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv892844	chr9:26062582-26298134	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26115400-26116200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:26115800-26116200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:26115800-26116400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:26116000-26116400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:26116000-26116400	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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