Variant report

Variant	rs12378378
Chromosome Location	chr9:116690465-116690466
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10116566	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10982000	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7034929	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73552357	0.82[AMR][1000 genomes]
rs7861276	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116675800-116691800	Weak transcription	Lung	lung
2	chr9:116679400-116691600	Weak transcription	Pancreas	Pancrea
3	chr9:116682400-116692000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:116684800-116690800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:116684800-116690800	Weak transcription	Osteobl	bone
6	chr9:116686000-116691400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:116686000-116692000	Weak transcription	Fetal Heart	heart
8	chr9:116689400-116690800	ZNF genes & repeats	Fetal Lung	lung
9	chr9:116689600-116691400	ZNF genes & repeats	HSMM	muscle
10	chr9:116689600-116693400	Weak transcription	Fetal Kidney	kidney
11	chr9:116689800-116691800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:116689800-116692000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:116690000-116692400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr9:116690000-116692400	ZNF genes & repeats	A549	lung
15	chr9:116690400-116691000	ZNF genes & repeats	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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