Variant report
| Variant | rs12386929 |
|---|---|
| Chromosome Location | chr8:50667493-50667494 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:50655915..50658373-chr8:50666894..50669710,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10957588 | 0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10957593 | 1.00[EUR][1000 genomes] |
| rs10957612 | 0.94[EUR][1000 genomes] |
| rs11987121 | 1.00[EUR][1000 genomes] |
| rs12386931 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12544231 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12546420 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17745925 | 1.00[EUR][1000 genomes] |
| rs4276703 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4292702 | 1.00[EUR][1000 genomes] |
| rs4294194 | 1.00[EUR][1000 genomes] |
| rs4300021 | 1.00[EUR][1000 genomes] |
| rs4360302 | 1.00[EUR][1000 genomes] |
| rs4392910 | 1.00[EUR][1000 genomes] |
| rs4392911 | 1.00[EUR][1000 genomes] |
| rs4464979 | 1.00[EUR][1000 genomes] |
| rs4487792 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4593555 | 1.00[EUR][1000 genomes] |
| rs4609205 | 1.00[EUR][1000 genomes] |
| rs4873371 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4873372 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61135582 | 1.00[EUR][1000 genomes] |
| rs7009884 | 1.00[EUR][1000 genomes] |
| rs7814018 | 1.00[EUR][1000 genomes] |
| rs7838733 | 1.00[EUR][1000 genomes] |
| rs9298208 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv917031 | chr8:50207246-50709286 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | esv3353749 | chr8:50530807-51139242 | Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:50667400-50668000 | Enhancers | H1 Cell Line | embryonic stem cell |
