The 2.0 version of rSNPBase

Variant report

Variant rs12401550
Chromosome Location chr1:213370433-213370434
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:213301000-213371000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr1:213301000-213374800 Weak transcription HSMM muscle
3 chr1:213326600-213422200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
4 chr1:213328200-213387200 Weak transcription Spleen Spleen
5 chr1:213337800-213374400 Weak transcription Muscle Satellite Cultured Cells --
6 chr1:213340600-213424600 Weak transcription Pancreas Pancrea
7 chr1:213345600-213404600 Weak transcription Osteobl bone
8 chr1:213346200-213387400 Weak transcription Gastric stomach
9 chr1:213350400-213383200 Weak transcription Placenta Placenta
10 chr1:213357800-213387200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
11 chr1:213358000-213375000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
12 chr1:213360000-213371400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
13 chr1:213360400-213371000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
14 chr1:213360400-213371000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
15 chr1:213360400-213371000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
16 chr1:213360400-213371200 Weak transcription Brain Inferior Temporal Lobe brain
17 chr1:213360400-213373200 Weak transcription Primary T helper naive cells from peripheral blood blood
18 chr1:213360400-213405200 Weak transcription Sigmoid Colon Sigmoid Colon
19 chr1:213360600-213370800 Weak transcription Fetal Lung lung
20 chr1:213360600-213378000 Weak transcription Stomach Smooth Muscle stomach
21 chr1:213360800-213372200 Weak transcription Left Ventricle heart
22 chr1:213361600-213386600 Weak transcription Aorta Aorta
23 chr1:213362200-213415400 Weak transcription Rectal Mucosa Donor 31 rectum
24 chr1:213362800-213372400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
25 chr1:213364400-213371000 Weak transcription Primary T killer naive cells fromperipheralblood blood
26 chr1:213364400-213372800 Weak transcription Cortex derived primary cultured neurospheres brain
27 chr1:213364600-213371000 Weak transcription Adipose Nuclei Adipose
28 chr1:213365400-213371000 Weak transcription Primary T cells from cord blood blood
29 chr1:213366200-213371200 Weak transcription NHDF-Ad bronchial
30 chr1:213367000-213372200 Weak transcription Ovary ovary
31 chr1:213368200-213378200 Weak transcription K562 blood
32 chr1:213368200-213386600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
33 chr1:213368200-213387200 Weak transcription Lung lung
34 chr1:213368600-213370800 Weak transcription Duodenum Smooth Muscle Duodenum
35 chr1:213368600-213370800 Weak transcription Monocytes-CD14+_RO01746 blood
36 chr1:213369600-213371200 Weak transcription Primary T helper naive cells fromperipheralblood blood
37 chr1:213369600-213388800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
38 chr1:213369800-213398200 Weak transcription Fetal Heart heart
39 chr1:213370000-213374400 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
40 chr1:213370200-213370600 ZNF genes & repeats Fetal Stomach stomach
41 chr1:213370200-213371200 Weak transcription Liver Liver
42 chr1:213370400-213371000 Strong transcription Primary B cells from cord blood blood
43 chr1:213370400-213371600 ZNF genes & repeats Primary T helper cells fromperipheralblood blood
44 chr1:213370400-213372000 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast

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Last update: Aug 31, 2015