Variant report

Variant	rs12405155
Chromosome Location	chr1:211713414-211713415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11119763	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11119769	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12075221	0.86[ASN][1000 genomes]
rs12077710	0.80[ASN][1000 genomes]
rs1977876	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4951531	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4951768	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60707186	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6662221	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6679498	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211689400-211715000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:211705200-211714600	Weak transcription	Right Atrium	heart
3	chr1:211705600-211714800	Weak transcription	Brain Anterior Caudate	brain
4	chr1:211705600-211714800	Weak transcription	Right Ventricle	heart
5	chr1:211708200-211714600	Weak transcription	Pancreas	Pancrea
6	chr1:211710200-211714600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:211711800-211714600	Weak transcription	Esophagus	oesophagus
8	chr1:211711800-211716000	Weak transcription	Spleen	Spleen
9	chr1:211712000-211714600	Weak transcription	Left Ventricle	heart
10	chr1:211712600-211714800	Weak transcription	Stomach Mucosa	stomach
11	chr1:211712600-211715400	Weak transcription	Fetal Heart	heart
12	chr1:211713000-211714600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr1:211713000-211714600	Weak transcription	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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