Variant report

Variant	rs12077710
Chromosome Location	chr1:211716861-211716862
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211558908..211560545-chr1:211715133..211717785,2	K562	blood:
2	chr1:211715199..211717091-chr1:211724445..211727190,2	K562	blood:
3	chr1:211714662..211717469-chr1:211751632..211754304,2	MCF-7	breast:
4	chr1:211715152..211718143-chr1:211748506..211750792,2	K562	blood:
5	chr1:211712198..211717179-chr1:211748278..211753995,7	MCF-7	breast:
6	chr1:211715756..211718108-chr1:211718831..211721205,2	MCF-7	breast:
7	chr1:211715064..211716989-chr1:211735008..211737498,2	MCF-7	breast:
8	chr1:211710959..211712610-chr1:211715464..211717291,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11119769	0.80[ASN][1000 genomes]
rs12075221	0.92[ASN][1000 genomes]
rs12082508	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12092944	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12405155	0.80[ASN][1000 genomes]
rs6679498	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211714600-211717400	Enhancers	Placenta	Placenta
2	chr1:211714800-211717000	Enhancers	Fetal Intestine Large	intestine
3	chr1:211714800-211717000	Enhancers	Fetal Intestine Small	intestine
4	chr1:211715800-211719800	Weak transcription	K562	blood
5	chr1:211716000-211720800	Weak transcription	Fetal Heart	heart
6	chr1:211716200-211717400	Weak transcription	Fetal Muscle Leg	muscle
7	chr1:211716200-211721600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr1:211716200-211722200	Weak transcription	Spleen	Spleen
9	chr1:211716600-211721000	Weak transcription	Right Atrium	heart
10	chr1:211716600-211721000	Weak transcription	Hela-S3	cervix
11	chr1:211716600-211721600	Weak transcription	Esophagus	oesophagus
12	chr1:211716600-211721600	Weak transcription	Left Ventricle	heart
13	chr1:211716600-211722000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr1:211716600-211722200	Weak transcription	Fetal Thymus	thymus
15	chr1:211716600-211725000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr1:211716800-211721600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr1:211716800-211721600	Weak transcription	Stomach Mucosa	stomach
18	chr1:211716800-211722000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr1:211716800-211722000	Weak transcription	Skeletal Muscle Male	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links