Variant report

Variant	rs12082508
Chromosome Location	chr1:211717115-211717116
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11119762	0.81[AMR][1000 genomes]
rs11119766	0.81[AMR][1000 genomes]
rs11119770	0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs12073799	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12077710	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12092944	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12407990	0.83[ASN][1000 genomes]
rs2230779	1.00[YRI][hapmap]
rs4951768	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211714600-211717400	Enhancers	Placenta	Placenta
2	chr1:211715800-211719800	Weak transcription	K562	blood
3	chr1:211716000-211720800	Weak transcription	Fetal Heart	heart
4	chr1:211716200-211717400	Weak transcription	Fetal Muscle Leg	muscle
5	chr1:211716200-211721600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr1:211716200-211722200	Weak transcription	Spleen	Spleen
7	chr1:211716600-211721000	Weak transcription	Right Atrium	heart
8	chr1:211716600-211721000	Weak transcription	Hela-S3	cervix
9	chr1:211716600-211721600	Weak transcription	Esophagus	oesophagus
10	chr1:211716600-211721600	Weak transcription	Left Ventricle	heart
11	chr1:211716600-211722000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr1:211716600-211722200	Weak transcription	Fetal Thymus	thymus
13	chr1:211716600-211725000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr1:211716800-211721600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr1:211716800-211721600	Weak transcription	Stomach Mucosa	stomach
16	chr1:211716800-211722000	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr1:211716800-211722000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr1:211717000-211720200	Weak transcription	Fetal Intestine Small	intestine
19	chr1:211717000-211720800	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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