The 2.0 version of rSNPBase

Variant report

Variant rs2230779
Chromosome Location chr1:211533352-211533353
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:108 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:211509800-211544200 Weak transcription HUVEC blood vessel
2 chr1:211510600-211555400 Weak transcription Skeletal Muscle Male skeletal muscle
3 chr1:211514800-211552200 Weak transcription Skeletal Muscle Female skeletal muscle
4 chr1:211515000-211555000 Weak transcription Hela-S3 cervix
5 chr1:211515000-211555800 Weak transcription Esophagus oesophagus
6 chr1:211515200-211543200 Weak transcription Colonic Mucosa Colon
7 chr1:211515400-211548400 Weak transcription Stomach Mucosa stomach
8 chr1:211519400-211549000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
9 chr1:211519800-211544800 Weak transcription Fetal Kidney kidney
10 chr1:211519800-211547400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
11 chr1:211519800-211548600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr1:211520800-211533800 Weak transcription Colon Smooth Muscle Colon
13 chr1:211521200-211550200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
14 chr1:211521600-211555200 Weak transcription Pancreatic Islets Pancreatic Islet
15 chr1:211523600-211542800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr1:211525000-211555600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
17 chr1:211525400-211550200 Weak transcription NHDF-Ad bronchial
18 chr1:211525400-211555000 Weak transcription Fetal Lung lung
19 chr1:211525600-211548200 Weak transcription iPS-15b Cell Line embryonic stem cell
20 chr1:211525600-211550200 Weak transcription H9 Cell Line embryonic stem cell
21 chr1:211526400-211542200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
22 chr1:211526400-211546400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
23 chr1:211526600-211534800 Strong transcription Fetal Muscle Trunk muscle
24 chr1:211526600-211555400 Weak transcription Cortex derived primary cultured neurospheres brain
25 chr1:211526800-211550800 Weak transcription Small Intestine intestine
26 chr1:211527400-211535400 Strong transcription Rectal Mucosa Donor 29 rectum
27 chr1:211527400-211550400 Weak transcription ES-I3 Cell Line embryonic stem cell
28 chr1:211527800-211535000 Strong transcription Primary B cells from cord blood blood
29 chr1:211528000-211535400 Weak transcription Brain Inferior Temporal Lobe brain
30 chr1:211528000-211551400 Strong transcription Primary B cells from peripheral blood blood
31 chr1:211528200-211550600 Strong transcription Primary T regulatory cells fromperipheralblood blood
32 chr1:211528400-211547600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr1:211528600-211535200 Strong transcription Primary hematopoietic stem cells short term culture blood
34 chr1:211528800-211554600 Weak transcription Psoas Muscle Psoas
35 chr1:211529000-211535000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
36 chr1:211529000-211535400 Strong transcription Primary T cells from cord blood blood
37 chr1:211529000-211539000 Strong transcription Fetal Stomach stomach
38 chr1:211529200-211538800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
39 chr1:211529400-211534200 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
40 chr1:211529400-211534600 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
41 chr1:211529400-211550400 Strong transcription Fetal Thymus thymus
42 chr1:211529600-211535400 Strong transcription Fetal Muscle Leg muscle
43 chr1:211529600-211535400 Strong transcription Thymus Thymus
44 chr1:211529600-211551200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
45 chr1:211530200-211534000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
46 chr1:211530200-211536000 Weak transcription Right Ventricle heart
47 chr1:211530200-211555800 Weak transcription Pancreas Pancrea
48 chr1:211530400-211545600 Weak transcription Lung lung
49 chr1:211530400-211555200 Weak transcription Brain Anterior Caudate brain
50 chr1:211530600-211539600 Weak transcription Rectal Smooth Muscle rectum

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Last update: Aug 31, 2015