Variant report

Variant	rs74138736
Chromosome Location	chr1:211586232-211586233
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17267540	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2230779	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41303275	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41307648	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56114647	0.87[AFR][1000 genomes]
rs58281296	0.90[AFR][1000 genomes]
rs58282668	0.87[AFR][1000 genomes]
rs58317460	0.91[AFR][1000 genomes]
rs58393607	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74137663	0.85[AFR][1000 genomes]
rs74138737	0.91[AFR][1000 genomes]
rs7554670	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762141	chr1:211538685-211603843	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	n/a
2	esv1824154	chr1:211565640-211614280	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211556800-211589800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211573800-211589600	Weak transcription	Ovary	ovary
3	chr1:211574000-211589600	Weak transcription	Liver	Liver
4	chr1:211575400-211588800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:211580400-211589600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:211581400-211608200	Weak transcription	Primary B cells from peripheral blood	blood
7	chr1:211581800-211589600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:211581800-211589600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:211581800-211589600	Weak transcription	Gastric	stomach
10	chr1:211581800-211590600	Weak transcription	Fetal Intestine Small	intestine
11	chr1:211582000-211586800	Weak transcription	Fetal Kidney	kidney
12	chr1:211583400-211587000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr1:211585000-211589400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr1:211585400-211593200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links