The 2.0 version of rSNPBase

Variant report

Variant rs12405583
Chromosome Location chr1:171812292-171812293
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:20 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:171809800-171812600 Active TSS Brain Hippocampus Middle brain
2 chr1:171809800-171812600 Active TSS Brain Dorsolateral Prefrontal Cortex brain
3 chr1:171809800-171813800 Active TSS Brain Cingulate Gyrus brain
4 chr1:171810200-171812400 Active TSS Brain Anterior Caudate brain
5 chr1:171810200-171813200 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
6 chr1:171810200-171813200 Active TSS Brain Substantia Nigra brain
7 chr1:171810200-171813600 Active TSS Brain Inferior Temporal Lobe brain
8 chr1:171810400-171814000 Active TSS Fetal Brain Female brain
9 chr1:171811200-171812400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
10 chr1:171811600-171812400 Flanking Active TSS Cortex derived primary cultured neurospheres brain
11 chr1:171811800-171812400 Bivalent Enhancer Fetal Lung lung
12 chr1:171812000-171812400 Flanking Active TSS Brain Angular Gyrus brain
13 chr1:171812000-171812400 Flanking Active TSS Fetal Brain Male brain
14 chr1:171812000-171813200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
15 chr1:171812200-171812400 Bivalent Enhancer HUES48 Cell Line embryonic stem cell
16 chr1:171812200-171812400 Bivalent Enhancer iPS-15b Cell Line embryonic stem cell
17 chr1:171812200-171812400 Enhancers Pancreatic Islets Pancreatic Islet
18 chr1:171812200-171813400 Weak transcription HMEC breast
19 chr1:171812200-171816600 Weak transcription Fetal Adrenal Gland Adrenal Gland
20 chr1:171812200-171833200 Weak transcription Brain Germinal Matrix brain

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Last update: Aug 31, 2015