Variant report

Variant	rs7554700
Chromosome Location	chr1:171861119-171861120
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:171851085..171853826-chr1:171859070..171862052,2	K562	blood:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1015008	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1022541	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1040517	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10737337	0.84[ASN][1000 genomes]
rs10737338	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10753202	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10753203	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10753204	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10753205	0.85[ASN][1000 genomes]
rs1076700	0.85[ASN][1000 genomes]
rs10798695	0.85[ASN][1000 genomes]
rs10798701	0.85[ASN][1000 genomes]
rs10798702	0.85[ASN][1000 genomes]
rs10798705	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10798706	0.84[CHB][hapmap];0.82[ASN][1000 genomes]
rs10798716	0.85[ASN][1000 genomes]
rs10798722	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10798725	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10798726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10913908	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1118173	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs12021814	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12024869	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs12025243	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs12029015	0.84[EUR][1000 genomes]
rs12040254	0.92[CEU][hapmap];0.84[CHB][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12047542	0.85[EUR][1000 genomes]
rs12239702	0.81[ASN][1000 genomes]
rs12405583	0.85[ASN][1000 genomes]
rs12747663	0.85[EUR][1000 genomes]
rs1535301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1555100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1972340	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1980488	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2145383	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs2206543	0.84[CHB][hapmap];0.85[ASN][1000 genomes]
rs2235696	0.85[ASN][1000 genomes]
rs2421915	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs2421947	0.84[CHB][hapmap];0.85[ASN][1000 genomes]
rs2901600	0.84[CHB][hapmap];0.85[ASN][1000 genomes]
rs34906981	0.92[EUR][1000 genomes]
rs4500358	0.85[ASN][1000 genomes]
rs4596936	0.92[EUR][1000 genomes]
rs4916235	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4916400	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4916401	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4916402	0.85[ASN][1000 genomes]
rs4916403	0.85[ASN][1000 genomes]
rs4916404	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4916411	0.92[EUR][1000 genomes]
rs6425454	0.85[ASN][1000 genomes]
rs6425455	0.85[ASN][1000 genomes]
rs6425456	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6425468	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6425484	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6425518	0.84[EUR][1000 genomes]
rs6657315	0.85[ASN][1000 genomes]
rs6660011	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6665335	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6679341	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6683945	0.84[CHB][hapmap];0.85[ASN][1000 genomes]
rs6685974	0.85[ASN][1000 genomes]
rs6686260	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6689231	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs6690848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6702944	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs71523161	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs742509	0.85[ASN][1000 genomes]
rs742510	0.84[CHB][hapmap];0.85[ASN][1000 genomes]
rs7514627	0.85[ASN][1000 genomes]
rs7517331	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7526653	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7554935	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs926545	0.84[CHB][hapmap];0.85[ASN][1000 genomes]
rs926546	0.84[ASN][1000 genomes]
rs965051	0.86[CHB][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3512995	chr1:171329123-171994470	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv3512997	chr1:171329123-171994470	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv831893	chr1:171802450-171985000	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171854000-171866000	Weak transcription	Brain Anterior Caudate	brain
2	chr1:171857800-171862000	Weak transcription	Aorta	Aorta
3	chr1:171858000-171867200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:171858400-171868200	Weak transcription	Left Ventricle	heart
5	chr1:171860600-171868200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:171861000-171861200	Enhancers	Fetal Brain Male	brain

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