Variant report

Variant rs6425484
Chromosome Location chr1:171883587-171883588
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:22 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:171868800-171884000 Weak transcription Fetal Lung lung
2 chr1:171868800-171885000 Weak transcription Fetal Adrenal Gland Adrenal Gland
3 chr1:171879800-171908000 Weak transcription H1 Cell Line embryonic stem cell
4 chr1:171880000-171883800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
5 chr1:171880200-171883800 Weak transcription Brain Inferior Temporal Lobe brain
6 chr1:171880400-171885600 Weak transcription HUES48 Cell Line embryonic stem cell
7 chr1:171880800-171884000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
8 chr1:171881000-171885400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
9 chr1:171881000-171886800 Enhancers Brain Cingulate Gyrus brain
10 chr1:171882000-171884600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr1:171882000-171889400 Weak transcription Sigmoid Colon Sigmoid Colon
12 chr1:171882400-171885200 Enhancers HMEC breast
13 chr1:171882400-171886000 Enhancers NHEK skin
14 chr1:171882600-171884400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
15 chr1:171883000-171883800 Weak transcription Brain Anterior Caudate brain
16 chr1:171883000-171885200 Weak transcription HSMMtube muscle
17 chr1:171883000-171885800 Enhancers Brain Hippocampus Middle brain
18 chr1:171883200-171883600 Weak transcription Brain Substantia Nigra brain
19 chr1:171883200-171884000 Enhancers A549 lung
20 chr1:171883200-171884400 Weak transcription Brain Angular Gyrus brain
21 chr1:171883200-171890400 Weak transcription Rectal Mucosa Donor 31 rectum
22 chr1:171883400-171887400 Weak transcription Cortex derived primary cultured neurospheres brain

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