Variant report

Variant	rs34906981
Chromosome Location	chr1:171893882-171893883
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1022541	0.93[EUR][1000 genomes]
rs1040517	0.88[EUR][1000 genomes]
rs10737338	0.88[EUR][1000 genomes]
rs10753202	0.89[EUR][1000 genomes]
rs10753203	0.89[EUR][1000 genomes]
rs10753204	0.89[EUR][1000 genomes]
rs10798705	0.89[EUR][1000 genomes]
rs10798722	0.90[EUR][1000 genomes]
rs10798725	0.89[EUR][1000 genomes]
rs10798726	0.92[EUR][1000 genomes]
rs10913908	0.89[EUR][1000 genomes]
rs12021814	0.93[EUR][1000 genomes]
rs12024869	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12025243	0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12029015	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12040254	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12047542	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12747663	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1535301	0.94[EUR][1000 genomes]
rs1555100	0.92[EUR][1000 genomes]
rs1972340	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1980488	0.92[EUR][1000 genomes]
rs2145383	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4596936	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4916235	0.90[EUR][1000 genomes]
rs4916400	0.86[EUR][1000 genomes]
rs4916401	0.87[EUR][1000 genomes]
rs4916404	0.89[EUR][1000 genomes]
rs4916411	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6425456	0.89[EUR][1000 genomes]
rs6425468	0.92[EUR][1000 genomes]
rs6425484	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6425518	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6660011	0.89[EUR][1000 genomes]
rs6665335	0.90[EUR][1000 genomes]
rs6673646	0.87[ASN][1000 genomes]
rs6679341	0.91[EUR][1000 genomes]
rs6686260	0.94[EUR][1000 genomes]
rs6689231	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6690848	0.94[EUR][1000 genomes]
rs71523161	0.94[EUR][1000 genomes]
rs7517331	0.87[EUR][1000 genomes]
rs7526653	0.89[EUR][1000 genomes]
rs7554700	0.92[EUR][1000 genomes]
rs7554935	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3512995	chr1:171329123-171994470	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv3512997	chr1:171329123-171994470	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv831893	chr1:171802450-171985000	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171879800-171908000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr1:171884200-171903400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr1:171886800-171902800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:171889800-171895200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:171889800-171897600	Weak transcription	Brain Hippocampus Middle	brain
6	chr1:171889800-171901800	Weak transcription	Brain Substantia Nigra	brain
7	chr1:171889800-171902600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr1:171893000-171894400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr1:171893600-171894000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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