Variant report

Variant	rs12409438
Chromosome Location	chr1:63430341-63430342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1000127	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12044152	0.86[ASN][1000 genomes]
rs12121455	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12121599	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12134645	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12135655	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12138360	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12140292	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12140346	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12733477	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1952677	0.85[ASN][1000 genomes]
rs2150031	0.85[ASN][1000 genomes]
rs2150032	0.85[ASN][1000 genomes]
rs35081264	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6662502	0.83[ASN][1000 genomes]
rs6662733	0.83[ASN][1000 genomes]
rs6662848	0.83[ASN][1000 genomes]
rs71643657	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830015	chr1:63261143-63455296	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv428741	chr1:63422898-63601892	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63427600-63434200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr1:63427800-63430600	Enhancers	Fetal Muscle Leg	muscle
3	chr1:63428000-63430600	Weak transcription	Right Atrium	heart
4	chr1:63428800-63430400	Enhancers	Fetal Muscle Trunk	muscle
5	chr1:63429000-63431000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:63429000-63432400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:63429400-63430400	Enhancers	GM12878-XiMat	blood
8	chr1:63429400-63432200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr1:63429400-63432400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr1:63429800-63432400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr1:63430200-63430400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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