Variant report

Variant	rs71643657
Chromosome Location	chr1:63443469-63443470
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12044152	0.83[ASN][1000 genomes]
rs12121455	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12121599	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12135655	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12138360	0.81[EUR][1000 genomes]
rs12140292	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12409438	0.84[EUR][1000 genomes]
rs12733477	0.85[EUR][1000 genomes]
rs1952677	0.84[ASN][1000 genomes]
rs2150031	0.83[ASN][1000 genomes]
rs2150032	0.84[ASN][1000 genomes]
rs35081264	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6662502	0.82[ASN][1000 genomes]
rs6662733	0.82[ASN][1000 genomes]
rs6662848	0.82[ASN][1000 genomes]
rs6694363	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830015	chr1:63261143-63455296	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv428741	chr1:63422898-63601892	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv461661	chr1:63441761-63609387	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv546432	chr1:63441761-63609387	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63442800-63444000	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr1:63443000-63444000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:63443200-63443800	Enhancers	Fetal Brain Female	brain
4	chr1:63443200-63444000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr1:63443200-63444000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr1:63443200-63444200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:63443200-63444800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr1:63443400-63444000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr1:63443400-63444200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links