Variant report

Variant	rs12410077
Chromosome Location	chr1:168707440-168707441
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:168703398..168707583-chr1:169074732..169078810,5	MCF-7	breast:
2	chr1:168701933..168707836-chr1:169074418..169079028,9	MCF-7	breast:
3	chr1:168701343..168703439-chr1:168705910..168708236,3	K562	blood:
4	chr1:168706095..168708640-chr1:168848539..168850688,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143153	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11577775	1.00[ASN][1000 genomes]
rs12065661	0.88[ASN][1000 genomes]
rs12401569	0.88[ASN][1000 genomes]
rs12401592	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12403860	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12411200	0.88[ASN][1000 genomes]
rs35915405	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58493284	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74121379	1.00[ASN][1000 genomes]
rs999310	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831836	chr1:168538779-168716956	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168701000-168710800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:168701800-168720400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:168703200-168708200	Enhancers	Colon Smooth Muscle	Colon
4	chr1:168704000-168708000	Enhancers	Fetal Lung	lung
5	chr1:168705600-168708200	Enhancers	Stomach Smooth Muscle	stomach
6	chr1:168705800-168707600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr1:168705800-168708200	Enhancers	Fetal Heart	heart
8	chr1:168706000-168708000	Enhancers	Brain Angular Gyrus	brain
9	chr1:168706200-168707600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr1:168706400-168707600	Enhancers	Left Ventricle	heart
11	chr1:168706400-168707800	Bivalent Enhancer	Fetal Stomach	stomach
12	chr1:168706600-168707600	Enhancers	Brain Anterior Caudate	brain
13	chr1:168706600-168707600	Enhancers	Fetal Brain Male	brain
14	chr1:168706600-168707600	Enhancers	Fetal Muscle Leg	muscle
15	chr1:168706600-168707600	Enhancers	Rectal Smooth Muscle	rectum
16	chr1:168706600-168707800	Enhancers	Brain Hippocampus Middle	brain
17	chr1:168706600-168707800	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr1:168706600-168707800	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr1:168706600-168708000	Enhancers	Brain Germinal Matrix	brain
20	chr1:168706600-168708000	Enhancers	Right Ventricle	heart
21	chr1:168706800-168707600	Enhancers	Fetal Brain Female	brain
22	chr1:168706800-168707600	Enhancers	Gastric	stomach
23	chr1:168706800-168707600	Enhancers	Right Atrium	heart
24	chr1:168706800-168708200	Enhancers	Brain Cingulate Gyrus	brain
25	chr1:168707000-168707600	Enhancers	Brain Substantia Nigra	brain
26	chr1:168707200-168707600	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr1:168707400-168707600	Enhancers	HepG2	liver
28	chr1:168707400-168708000	Enhancers	Aorta	Aorta

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