Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:168733427..168735110-chr1:168744010..168746645,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10157677	0.94[CEU][hapmap]
rs10918977	0.94[CEU][hapmap];0.90[GIH][hapmap];0.86[EUR][1000 genomes]
rs10918978	0.86[EUR][1000 genomes]
rs10918979	0.86[AFR][1000 genomes]
rs10918980	0.91[EUR][1000 genomes]
rs10918981	0.85[AFR][1000 genomes]
rs11577775	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12060876	0.96[AFR][1000 genomes]
rs12063208	0.85[AFR][1000 genomes]
rs12065214	0.81[AFR][1000 genomes]
rs12401592	0.88[ASN][1000 genomes]
rs12410077	0.88[ASN][1000 genomes]
rs12411200	1.00[ASN][1000 genomes]
rs16861545	1.00[JPT][hapmap]
rs2017633	0.91[EUR][1000 genomes]
rs2744658	0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs2786762	0.81[AFR][1000 genomes]
rs35915405	0.88[ASN][1000 genomes]
rs3950134	0.93[GIH][hapmap]
rs4656616	0.82[EUR][1000 genomes]
rs471972	0.94[CEU][hapmap]
rs58493284	0.88[ASN][1000 genomes]
rs585646	0.94[CEU][hapmap]
rs59684779	0.95[AFR][1000 genomes]
rs61801624	0.82[EUR][1000 genomes]
rs61801626	0.82[EUR][1000 genomes]
rs662154	0.94[CEU][hapmap];0.83[GIH][hapmap]
rs74121379	0.88[ASN][1000 genomes]
rs7556567	0.82[EUR][1000 genomes]
rs999310	1.00[CHB][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168726200-168736600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:168726400-168735400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:168730000-168735600	Weak transcription	Fetal Heart	heart
4	chr1:168730000-168737200	Weak transcription	Left Ventricle	heart
5	chr1:168730400-168743600	Weak transcription	Psoas Muscle	Psoas
6	chr1:168733000-168737000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:168733600-168736800	Weak transcription	NHEK	skin
8	chr1:168733600-168737200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:168733800-168737000	Weak transcription	HMEC	breast
10	chr1:168734000-168734600	Enhancers	HepG2	liver
11	chr1:168734200-168739200	Enhancers	Fetal Lung	lung

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