Variant report

Variant	rs10157677
Chromosome Location	chr1:168731652-168731653
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10918976	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10918977	1.00[ASW][hapmap];0.88[CEU][hapmap];0.84[LWK][hapmap];0.85[MKK][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10918978	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11585611	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11589260	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11591144	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2017633	0.83[AMR][1000 genomes]
rs4656616	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs471972	1.00[CEU][hapmap];0.96[GIH][hapmap];0.81[MEX][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes]
rs585646	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs61801624	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61801626	0.89[EUR][1000 genomes]
rs662154	1.00[CEU][hapmap];1.00[MEX][hapmap];0.80[EUR][1000 genomes]
rs6666794	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs737608	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7556567	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10157677	RGS5	cis	parietal	SCAN
rs10157677	ATP1B1	cis	lymphoblastoid	seeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168726200-168736600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:168726400-168735400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:168730000-168735600	Weak transcription	Fetal Heart	heart
4	chr1:168730000-168737200	Weak transcription	Left Ventricle	heart
5	chr1:168730400-168743600	Weak transcription	Psoas Muscle	Psoas
6	chr1:168731400-168733600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:168731400-168733800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:168731600-168732600	Enhancers	HepG2	liver
9	chr1:168731600-168733600	Enhancers	NHEK	skin
10	chr1:168731600-168733800	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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