Variant report

Variant	rs6666794
Chromosome Location	chr1:168723894-168723895
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10157677	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10918976	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10918977	0.85[AMR][1000 genomes]
rs10918978	0.85[AMR][1000 genomes]
rs11585611	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11589260	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11591144	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4656616	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs471972	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs585646	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61801624	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61801626	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs662154	0.88[EUR][1000 genomes]
rs737608	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7556567	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168711200-168724200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:168720800-168724000	Weak transcription	Fetal Heart	heart
3	chr1:168721200-168725400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr1:168721400-168725200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:168722000-168728200	Weak transcription	Pancreas	Pancrea
6	chr1:168722200-168724200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:168722200-168727400	Weak transcription	Fetal Intestine Small	intestine
8	chr1:168723400-168724000	Enhancers	HepG2	liver
9	chr1:168723600-168724200	Enhancers	Fetal Kidney	kidney
10	chr1:168723800-168726200	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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