Variant report

Variant	rs585646
Chromosome Location	chr1:168700623-168700624
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10157677	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs10918976	0.92[EUR][1000 genomes]
rs10918977	0.88[CEU][hapmap]
rs11585611	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11589260	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11591144	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4656616	0.85[EUR][1000 genomes]
rs471972	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61801624	0.85[EUR][1000 genomes]
rs61801626	0.85[EUR][1000 genomes]
rs662154	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6666794	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs737608	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7556567	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831836	chr1:168538779-168716956	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168696000-168701000	Weak transcription	Fetal Heart	heart
2	chr1:168698400-168701400	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:168698400-168703400	Weak transcription	Psoas Muscle	Psoas
4	chr1:168698400-168705800	Weak transcription	Left Ventricle	heart
5	chr1:168698400-168707400	Weak transcription	Aorta	Aorta
6	chr1:168698800-168702000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr1:168698800-168704400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr1:168699000-168703200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr1:168699000-168703400	Weak transcription	Fetal Muscle Leg	muscle
10	chr1:168699000-168704000	Weak transcription	Fetal Lung	lung
11	chr1:168699000-168704400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr1:168699200-168703400	Weak transcription	Fetal Stomach	stomach
13	chr1:168699200-168703400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr1:168699200-168706600	Weak transcription	Placenta	Placenta
15	chr1:168699400-168703400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:168700200-168701800	Enhancers	Placenta Amnion	Placenta Amnion
17	chr1:168700600-168701000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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