Variant report

Variant	rs11589260
Chromosome Location	chr1:168714326-168714327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10157677	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10918976	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10918977	0.82[AMR][1000 genomes]
rs10918978	0.82[AMR][1000 genomes]
rs11585611	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11591144	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4656616	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs471972	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs585646	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61801624	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61801626	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs662154	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6666794	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs737608	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7556567	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831836	chr1:168538779-168716956	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168701800-168720400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:168711200-168724200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links