Variant report

Variant	rs10918978
Chromosome Location	chr1:168733424-168733425
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10157677	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10918976	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10918977	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10918980	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11577775	0.93[EUR][1000 genomes]
rs11585611	0.81[AMR][1000 genomes]
rs11589260	0.82[AMR][1000 genomes]
rs11591144	0.82[AMR][1000 genomes]
rs12065661	0.86[EUR][1000 genomes]
rs2017633	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4656615	0.81[AFR][1000 genomes]
rs6666794	0.85[AMR][1000 genomes]
rs737608	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168726200-168736600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:168726400-168735400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:168730000-168735600	Weak transcription	Fetal Heart	heart
4	chr1:168730000-168737200	Weak transcription	Left Ventricle	heart
5	chr1:168730400-168743600	Weak transcription	Psoas Muscle	Psoas
6	chr1:168731400-168733600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:168731400-168733800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:168731600-168733600	Enhancers	NHEK	skin
9	chr1:168731600-168733800	Enhancers	HMEC	breast
10	chr1:168732600-168734000	Weak transcription	HepG2	liver
11	chr1:168733000-168737000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links