Variant report

Variant	rs12411016
Chromosome Location	chr1:76479915-76479916
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11579206	0.83[AMR][1000 genomes]
rs12405897	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12408790	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1251482	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1251483	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1251516	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1251520	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1251521	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1251522	0.84[AMR][1000 genomes]
rs1658741	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17657999	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1770896	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1892480	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2004130	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4949620	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4949689	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72988522	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76478000-76480000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:76479800-76484000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:76479800-76484200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links