Variant report

Variant	rs1658741
Chromosome Location	chr1:76480495-76480496
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12405897	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12408790	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12411016	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1251482	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1251483	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1251516	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1251520	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1251521	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17657999	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1770896	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1892480	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2004130	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4949620	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4949689	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72988522	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76479800-76484000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:76479800-76484200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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