Variant report

Variant	rs1241229
Chromosome Location	chr12:116947891-116947892
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1241233	0.82[EUR][1000 genomes]
rs1922428	0.85[EUR][1000 genomes]
rs2249838	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2707201	0.85[EUR][1000 genomes]
rs2733638	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2733639	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899540	chr12:116920503-116999861	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:116946600-116970400	Weak transcription	Esophagus	oesophagus
2	chr12:116946800-116949400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr12:116946800-116959200	Weak transcription	Right Atrium	heart
4	chr12:116947000-116950800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr12:116947000-116952400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr12:116947000-116954600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:116947000-116956400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr12:116947000-116956400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr12:116947200-116949200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr12:116947600-116955000	Weak transcription	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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