Variant report

Variant	rs2707201
Chromosome Location	chr12:116936563-116936564
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1241229	0.85[EUR][1000 genomes]
rs1922428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2733638	0.85[EUR][1000 genomes]
rs2733639	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899540	chr12:116920503-116999861	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:116929400-116937200	Weak transcription	Spleen	Spleen
2	chr12:116931400-116937400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr12:116933200-116945800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr12:116933400-116939800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr12:116933400-116944400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:116935400-116939800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr12:116935400-116940400	Weak transcription	Fetal Muscle Leg	muscle
8	chr12:116935400-116943200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr12:116935400-116944000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr12:116935600-116936600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr12:116935600-116936600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr12:116935600-116936600	Weak transcription	NHDF-Ad	bronchial
13	chr12:116935600-116937800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr12:116935600-116939600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr12:116935600-116939800	Weak transcription	A549	lung
16	chr12:116935600-116940200	Weak transcription	Stomach Mucosa	stomach
17	chr12:116935600-116940800	Weak transcription	Gastric	stomach
18	chr12:116936200-116937000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr12:116936400-116937200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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