Variant report

Variant	rs12413864
Chromosome Location	chr10:118158396-118158397
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10885932	0.81[AMR][1000 genomes]
rs11197666	0.81[ASN][1000 genomes]
rs11197681	0.81[AMR][1000 genomes]
rs12413841	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12415255	0.89[AMR][1000 genomes]
rs17094739	0.89[AMR][1000 genomes]
rs17094741	0.83[AMR][1000 genomes]
rs17094744	0.83[AMR][1000 genomes]
rs17094748	0.81[AMR][1000 genomes]
rs73375795	0.85[ASN][1000 genomes]
rs73375799	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046807	chr10:118105880-118162086	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv832001	chr10:118138370-118315059	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118155600-118160400	Weak transcription	HMEC	breast
2	chr10:118157000-118158400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr10:118157400-118158400	Enhancers	H9 Cell Line	embryonic stem cell
4	chr10:118157400-118158400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr10:118157600-118158400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr10:118157800-118158600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:118158000-118161200	Weak transcription	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links