Variant report

Variant	rs11197681
Chromosome Location	chr10:118196141-118196142
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10885932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885934	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10885935	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12413841	0.81[AMR][1000 genomes]
rs12413864	0.81[AMR][1000 genomes]
rs12415255	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094693	0.84[ASN][1000 genomes]
rs17094710	0.84[ASN][1000 genomes]
rs17094717	0.85[CEU][hapmap];0.88[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17094724	0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17094739	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094741	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17094744	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17094748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107883	0.84[ASN][1000 genomes]
rs57823536	0.84[ASN][1000 genomes]
rs58682643	0.84[ASN][1000 genomes]
rs62619836	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832001	chr10:118138370-118315059	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118190800-118197800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:118191600-118216200	Weak transcription	Pancreas	Pancrea
3	chr10:118193000-118197200	Genic enhancers	NHEK	skin
4	chr10:118195200-118196600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:118195600-118196800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:118196000-118198000	Genic enhancers	HMEC	breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links