Variant report

Variant	rs17094724
Chromosome Location	chr10:118187360-118187361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr10:118187129-118187468	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr10:118186901-118187566	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr10:118186969-118187525	MCF10A-Er-Src	breast:	n/a	chr10:118187253-118187263 chr10:118187253-118187263 chr10:118187253-118187263 chr10:118187254-118187262 chr10:118187253-118187263 chr10:118187284-118187296
4	POLR2A	chr10:118187211-118190623	MCF10A-Er-Src	breast:	n/a	n/a
5	FOXA1	chr10:118187210-118187451	A549	lung:	n/a	chr10:118187355-118187367
6	FOS	chr10:118187168-118187521	MCF10A-Er-Src	breast:	n/a	chr10:118187253-118187263 chr10:118187253-118187263 chr10:118187253-118187263 chr10:118187254-118187262 chr10:118187253-118187263 chr10:118187284-118187296
7	FOS	chr10:118187076-118187483	MCF10A-Er-Src	breast:	n/a	chr10:118187253-118187263 chr10:118187253-118187263 chr10:118187253-118187263 chr10:118187254-118187262 chr10:118187253-118187263 chr10:118187284-118187296
8	STAT3	chr10:118187161-118187535	MCF10A-Er-Src	breast:	n/a	n/a
9	E2F4	chr10:118187143-118187447	MCF10A-Er-Src	breast:	n/a	n/a
10	CEBPB	chr10:118187206-118187643	MCF-7	breast:	n/a	n/a
11	JUN	chr10:118187318-118187501	HepG2	liver:	n/a	chr10:118187421-118187434
12	MYC	chr10:118187291-118187520	MCF10A-Er-Src	breast:	n/a	n/a
13	FOS	chr10:118187137-118187504	MCF10A-Er-Src	breast:	n/a	chr10:118187253-118187263 chr10:118187253-118187263 chr10:118187253-118187263 chr10:118187254-118187262 chr10:118187253-118187263 chr10:118187284-118187296
14	STAT3	chr10:118187286-118187573	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
PNLIPRP3	TF binding region

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10885932	0.84[ASN][1000 genomes]
rs10885934	0.83[ASN][1000 genomes]
rs10885935	0.83[ASN][1000 genomes]
rs11197666	0.85[AMR][1000 genomes]
rs11197681	0.84[ASN][1000 genomes]
rs12415255	0.84[ASN][1000 genomes]
rs12569633	0.88[AMR][1000 genomes]
rs12571391	0.84[AMR][1000 genomes]
rs17094693	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17094710	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17094717	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094739	0.84[ASN][1000 genomes]
rs17094741	0.84[ASN][1000 genomes]
rs17094744	0.84[ASN][1000 genomes]
rs17094748	0.84[ASN][1000 genomes]
rs17107883	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41350344	1.00[GIH][hapmap]
rs57823536	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58682643	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62619836	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73375799	0.85[AMR][1000 genomes]
rs7915872	0.88[AMR][1000 genomes]
rs7916447	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832001	chr10:118138370-118315059	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17094724	FABP4	trans	brain	seeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118187000-118187400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr10:118187000-118188800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr10:118187200-118189200	Active TSS	HMEC	breast
4	chr10:118187200-118189200	Active TSS	NHEK	skin
5	chr10:118187200-118189400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:118187200-118190200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:118187200-118190800	Enhancers	Liver	Liver

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