Variant report

Variant	rs12569633
Chromosome Location	chr10:118167821-118167822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11197666	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12571391	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17094693	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs17094710	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs17094724	0.88[AMR][1000 genomes]
rs17107883	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs57823536	0.88[AMR][1000 genomes]
rs62619836	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73375799	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7915872	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7916447	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832001	chr10:118138370-118315059	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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