Variant report

Variant	rs17107883
Chromosome Location	chr10:118180834-118180835
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10885932	0.84[ASN][1000 genomes]
rs10885934	0.83[ASN][1000 genomes]
rs10885935	0.83[ASN][1000 genomes]
rs11197681	0.84[ASN][1000 genomes]
rs12415255	0.84[ASN][1000 genomes]
rs12569633	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs17094693	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094710	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094717	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17094724	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094739	0.84[ASN][1000 genomes]
rs17094741	0.84[ASN][1000 genomes]
rs17094744	0.84[ASN][1000 genomes]
rs17094748	0.84[ASN][1000 genomes]
rs57823536	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58682643	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62619836	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73375795	0.82[AMR][1000 genomes]
rs7915872	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832001	chr10:118138370-118315059	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118176800-118182000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:118177600-118182600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr10:118179400-118181000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:118179600-118181800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:118179800-118181000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:118179800-118181000	Weak transcription	HMEC	breast
7	chr10:118179800-118181000	Weak transcription	NHEK	skin
8	chr10:118180800-118181800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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