Variant report

Variant	rs58682643
Chromosome Location	chr10:118188768-118188769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10885932	0.84[ASN][1000 genomes]
rs10885934	0.83[ASN][1000 genomes]
rs10885935	0.83[ASN][1000 genomes]
rs11197681	0.84[ASN][1000 genomes]
rs12415255	0.84[ASN][1000 genomes]
rs17094693	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094710	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17094724	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094739	0.84[ASN][1000 genomes]
rs17094741	0.84[ASN][1000 genomes]
rs17094744	0.84[ASN][1000 genomes]
rs17094748	0.84[ASN][1000 genomes]
rs17107883	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57823536	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62619836	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73375795	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832001	chr10:118138370-118315059	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118187000-118188800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:118187200-118189200	Active TSS	HMEC	breast
3	chr10:118187200-118189200	Active TSS	NHEK	skin
4	chr10:118187200-118189400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:118187200-118190200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:118187200-118190800	Enhancers	Liver	Liver
7	chr10:118187400-118188800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:118188400-118188800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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