Variant report

Variant	rs12571391
Chromosome Location	chr10:118154418-118154419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11197666	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12569633	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17094693	0.86[AMR][1000 genomes]
rs17094710	0.86[AMR][1000 genomes]
rs17094724	0.84[AMR][1000 genomes]
rs57823536	0.84[AMR][1000 genomes]
rs62619836	0.86[AMR][1000 genomes]
rs73375799	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7915872	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7916447	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046807	chr10:118105880-118162086	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv832001	chr10:118138370-118315059	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118153400-118157600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:118154400-118154800	Flanking Active TSS	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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