Variant report

Variant	rs12414434
Chromosome Location	chr10:98779290-98779291
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98773602..98775670-chr10:98778246..98780739,2	K562	blood:
2	chr10:98778244..98780555-chr10:98781738..98784198,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1962436	0.82[YRI][hapmap]
rs4917753	0.86[YRI][hapmap]
rs4919062	0.87[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.90[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58934362	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7091937	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7093792	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1052931	chr10:98676192-98862301	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1042398	chr10:98691406-98851346	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98756200-98780000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:98770200-98780200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:98774000-98779400	Weak transcription	Fetal Intestine Small	intestine
4	chr10:98775000-98779800	Weak transcription	Fetal Intestine Large	intestine
5	chr10:98775200-98779800	Weak transcription	Fetal Lung	lung
6	chr10:98775200-98780400	Weak transcription	Psoas Muscle	Psoas
7	chr10:98775600-98780000	Weak transcription	Fetal Heart	heart
8	chr10:98776800-98780600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr10:98777000-98780200	Weak transcription	NH-A	brain
10	chr10:98777000-98780400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:98777400-98780200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr10:98777400-98780400	Strong transcription	Brain Germinal Matrix	brain
13	chr10:98777400-98781000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr10:98777400-98781600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:98777400-98782000	Enhancers	Fetal Muscle Leg	muscle
16	chr10:98777600-98780600	Weak transcription	GM12878-XiMat	blood
17	chr10:98777600-98781400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr10:98777600-98781600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:98777600-98791000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr10:98778000-98779400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr10:98778000-98780000	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr10:98778000-98780800	Weak transcription	Right Atrium	heart
23	chr10:98778000-98797200	Strong transcription	Fetal Thymus	thymus
24	chr10:98778400-98782000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:98778600-98780000	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr10:98778800-98781400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:98778800-98794400	Weak transcription	Thymus	Thymus
28	chr10:98779000-98780200	Enhancers	Stomach Smooth Muscle	stomach
29	chr10:98779000-98784400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr10:98779200-98779400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
31	chr10:98779200-98779600	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr10:98779200-98780000	Weak transcription	HSMMtube	muscle
33	chr10:98779200-98781200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr10:98779200-98781200	Enhancers	Right Ventricle	heart
35	chr10:98779200-98782600	Strong transcription	Fetal Brain Female	brain

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