Variant report

Variant	rs58934362
Chromosome Location	chr10:98781380-98781381
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12414434	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4919062	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7091937	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1052931	chr10:98676192-98862301	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1042398	chr10:98691406-98851346	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98777400-98781600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr10:98777400-98782000	Enhancers	Fetal Muscle Leg	muscle
3	chr10:98777600-98781400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr10:98777600-98781600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:98777600-98791000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr10:98778000-98797200	Strong transcription	Fetal Thymus	thymus
7	chr10:98778400-98782000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:98778800-98781400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:98778800-98794400	Weak transcription	Thymus	Thymus
10	chr10:98779000-98784400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:98779200-98782600	Strong transcription	Fetal Brain Female	brain
12	chr10:98779600-98782800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:98779800-98781800	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr10:98780000-98781400	Enhancers	Fetal Heart	heart
15	chr10:98780000-98782000	Enhancers	HSMMtube	muscle
16	chr10:98780000-98782200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr10:98780000-98782200	Enhancers	Brain Cingulate Gyrus	brain
18	chr10:98780200-98781400	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr10:98780200-98781400	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr10:98780200-98781400	Enhancers	Ovary	ovary
21	chr10:98780200-98782600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr10:98780400-98782000	Enhancers	Brain Angular Gyrus	brain
23	chr10:98780400-98782000	Enhancers	Brain Hippocampus Middle	brain
24	chr10:98780400-98782000	Enhancers	Psoas Muscle	Psoas
25	chr10:98780400-98782000	Enhancers	Osteobl	bone
26	chr10:98780400-98783000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr10:98780600-98782000	Enhancers	Fetal Muscle Trunk	muscle
28	chr10:98780600-98782600	Enhancers	GM12878-XiMat	blood
29	chr10:98780600-98785200	Weak transcription	Duodenum Mucosa	Duodenum
30	chr10:98780800-98782000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr10:98780800-98782000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr10:98780800-98783600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr10:98781000-98781800	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr10:98781000-98782000	Enhancers	Stomach Smooth Muscle	stomach
35	chr10:98781000-98783200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr10:98781000-98783200	Weak transcription	NH-A	brain
37	chr10:98781000-98783600	Weak transcription	Fetal Intestine Large	intestine
38	chr10:98781000-98783800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr10:98781000-98785200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr10:98781200-98781400	Enhancers	Colon Smooth Muscle	Colon
41	chr10:98781200-98781800	Enhancers	HepG2	liver
42	chr10:98781200-98782000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr10:98781200-98783200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr10:98781200-98783200	Weak transcription	Fetal Intestine Small	intestine
45	chr10:98781200-98783400	Weak transcription	Adipose Nuclei	Adipose
46	chr10:98781200-98783400	Weak transcription	Pancreas	Pancrea
47	chr10:98781200-98783400	Weak transcription	Right Atrium	heart
48	chr10:98781200-98783600	Weak transcription	Rectal Smooth Muscle	rectum
49	chr10:98781200-98783600	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr10:98781200-98783600	Weak transcription	HSMM	muscle

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