Variant report

Variant	rs12415482
Chromosome Location	chr10:99281562-99281563
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99256542..99259693-chr10:99280360..99283727,3	MCF-7	breast:
2	chr10:99280525..99282276-chr10:99293134..99294655,2	K562	blood:
3	chr10:99280106..99282140-chr10:99290558..99292747,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165886	Chromatin interaction
ENSG00000155229	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10882956	0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs11189244	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11189245	0.82[EUR][1000 genomes]
rs11189253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11189259	0.92[EUR][1000 genomes]
rs11189266	0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4919104	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs59109814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089060	0.83[ASN][1000 genomes]
rs7893335	0.80[ASN][1000 genomes]
rs7915501	0.81[ASN][1000 genomes]
rs7921278	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7921505	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99270800-99286200	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr10:99273800-99283200	Enhancers	Fetal Muscle Leg	muscle
3	chr10:99273800-99283200	Enhancers	Left Ventricle	heart
4	chr10:99274200-99285000	Enhancers	Right Ventricle	heart
5	chr10:99275000-99293800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:99276000-99284400	Weak transcription	HepG2	liver
7	chr10:99277200-99282800	Enhancers	HSMMtube	muscle
8	chr10:99277800-99281800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr10:99277800-99301800	Weak transcription	Gastric	stomach
10	chr10:99278000-99302600	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr10:99278200-99281600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr10:99278200-99298800	Weak transcription	Aorta	Aorta
13	chr10:99278400-99281800	Weak transcription	Esophagus	oesophagus
14	chr10:99278400-99289600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr10:99278400-99301800	Weak transcription	Spleen	Spleen
16	chr10:99278600-99281800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr10:99278600-99284400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:99278600-99300200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr10:99278800-99281800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:99278800-99284400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr10:99279000-99284400	Weak transcription	Ovary	ovary
22	chr10:99279400-99281600	Weak transcription	Brain Anterior Caudate	brain
23	chr10:99279400-99281800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr10:99279400-99284600	Weak transcription	Adipose Nuclei	Adipose
25	chr10:99279600-99282000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr10:99279600-99284000	Enhancers	Right Atrium	heart
27	chr10:99279800-99282000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr10:99279800-99282000	Weak transcription	Brain Substantia Nigra	brain
29	chr10:99279800-99282200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr10:99279800-99283800	Weak transcription	Brain Hippocampus Middle	brain
31	chr10:99279800-99284600	Weak transcription	Brain Angular Gyrus	brain
32	chr10:99279800-99287200	Enhancers	Lung	lung
33	chr10:99280000-99281600	Weak transcription	HSMM	muscle
34	chr10:99280200-99281600	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr10:99280200-99282000	Enhancers	H1 Cell Line	embryonic stem cell
36	chr10:99280200-99284600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr10:99280400-99281600	Weak transcription	Fetal Lung	lung
38	chr10:99280400-99282000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr10:99280400-99282200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr10:99280400-99282200	Enhancers	Pancreas	Pancrea
41	chr10:99280400-99283000	Enhancers	Fetal Muscle Trunk	muscle
42	chr10:99280600-99283000	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr10:99280800-99281600	Enhancers	Placenta	Placenta
44	chr10:99281200-99281800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr10:99281200-99282000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr10:99281200-99282200	Enhancers	Psoas Muscle	Psoas
47	chr10:99281200-99291400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr10:99281400-99282200	Enhancers	Brain Cingulate Gyrus	brain
49	chr10:99281400-99282600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr10:99281400-99282800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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