Variant report

Variant	rs11189266
Chromosome Location	chr10:99291512-99291513
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99223527..99224029-chr10:99291258..99292125,2	MCF-7	breast:
2	chr10:99280106..99282140-chr10:99290558..99292747,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155229	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10748698	0.89[ASN][1000 genomes]
rs10748699	0.92[ASN][1000 genomes]
rs10748700	0.89[ASN][1000 genomes]
rs10882956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882959	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10882961	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10882962	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10882965	0.89[ASN][1000 genomes]
rs10882966	0.88[ASN][1000 genomes]
rs11189253	0.87[ASN][1000 genomes]
rs11189259	0.80[ASN][1000 genomes]
rs11189267	0.90[EUR][1000 genomes]
rs11189275	0.89[ASN][1000 genomes]
rs11189278	0.89[ASN][1000 genomes]
rs11528108	0.88[ASN][1000 genomes]
rs11528109	0.88[ASN][1000 genomes]
rs12219064	0.86[ASN][1000 genomes]
rs12221474	0.81[ASN][1000 genomes]
rs12243136	0.87[ASN][1000 genomes]
rs12415482	0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs12767760	0.82[EUR][1000 genomes]
rs12779451	0.81[EUR][1000 genomes]
rs1572860	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17108059	0.90[ASN][1000 genomes]
rs4635019	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4919104	0.87[ASN][1000 genomes]
rs59109814	0.87[ASN][1000 genomes]
rs7077211	0.86[ASN][1000 genomes]
rs7475470	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7902642	0.87[ASN][1000 genomes]
rs7911122	0.81[EUR][1000 genomes]
rs7921253	0.85[ASN][1000 genomes]
rs7921278	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7921505	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv7508	chr10:99285375-99330501	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99275000-99293800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:99277800-99301800	Weak transcription	Gastric	stomach
3	chr10:99278000-99302600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:99278200-99298800	Weak transcription	Aorta	Aorta
5	chr10:99278400-99301800	Weak transcription	Spleen	Spleen
6	chr10:99278600-99300200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:99281400-99302200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:99282200-99301800	Weak transcription	Pancreas	Pancrea
9	chr10:99282400-99298200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:99282800-99292800	Weak transcription	HSMMtube	muscle
11	chr10:99282800-99299400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:99284800-99291800	Weak transcription	Brain Anterior Caudate	brain
13	chr10:99284800-99292000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr10:99285000-99293000	Weak transcription	Brain Substantia Nigra	brain
15	chr10:99285200-99298600	Weak transcription	Right Atrium	heart
16	chr10:99286000-99293600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr10:99286200-99291800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr10:99286200-99299200	Weak transcription	Ovary	ovary
19	chr10:99286400-99293800	Weak transcription	Psoas Muscle	Psoas
20	chr10:99287200-99298200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:99289800-99291800	Weak transcription	Esophagus	oesophagus
22	chr10:99289800-99293000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:99290000-99291600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr10:99290000-99292600	Weak transcription	Brain Hippocampus Middle	brain
25	chr10:99290000-99292800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:99290000-99298200	Weak transcription	Adipose Nuclei	Adipose
27	chr10:99290000-99299400	Weak transcription	Right Ventricle	heart
28	chr10:99290200-99292800	Weak transcription	A549	lung
29	chr10:99291000-99294200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr10:99291000-99295000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:99291000-99295000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr10:99291200-99291600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr10:99291200-99292000	Enhancers	Muscle Satellite Cultured Cells	--
34	chr10:99291200-99292000	Enhancers	Lung	lung
35	chr10:99291200-99292200	Enhancers	NH-A	brain
36	chr10:99291200-99292600	Weak transcription	HSMM	muscle
37	chr10:99291200-99293400	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr10:99291200-99293400	Enhancers	Osteobl	bone
39	chr10:99291200-99295000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:99291400-99291600	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr10:99291400-99291600	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr10:99291400-99291600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr10:99291400-99291600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr10:99291400-99291800	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr10:99291400-99291800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr10:99291400-99292000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr10:99291400-99292000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr10:99291400-99292000	Enhancers	NHDF-Ad	bronchial
49	chr10:99291400-99292200	Enhancers	Placenta	Placenta
50	chr10:99291400-99292800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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