Variant report

Variant	rs7911122
Chromosome Location	chr10:99293656-99293657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99280525..99282276-chr10:99293134..99294655,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10882957	0.95[ASN][1000 genomes]
rs10882963	0.91[ASN][1000 genomes]
rs10882967	0.85[ASN][1000 genomes]
rs1107517	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1107518	0.94[ASN][1000 genomes]
rs11189266	0.81[EUR][1000 genomes]
rs11189267	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11189270	0.98[ASN][1000 genomes]
rs11189274	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11189280	0.92[ASN][1000 genomes]
rs11189284	0.80[ASN][1000 genomes]
rs11511362	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11814566	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12355384	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12357750	0.92[ASN][1000 genomes]
rs12415338	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12766074	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12767760	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12774288	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12775868	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12779451	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12783481	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1417408	0.98[ASN][1000 genomes]
rs3814554	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4244325	0.83[ASN][1000 genomes]
rs4244326	0.81[ASN][1000 genomes]
rs4919108	0.98[ASN][1000 genomes]
rs4919109	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs68084394	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7077976	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7094973	0.83[ASN][1000 genomes]
rs7342022	0.81[ASN][1000 genomes]
rs7475851	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv7508	chr10:99285375-99330501	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99275000-99293800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:99277800-99301800	Weak transcription	Gastric	stomach
3	chr10:99278000-99302600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:99278200-99298800	Weak transcription	Aorta	Aorta
5	chr10:99278400-99301800	Weak transcription	Spleen	Spleen
6	chr10:99278600-99300200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:99281400-99302200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:99282200-99301800	Weak transcription	Pancreas	Pancrea
9	chr10:99282400-99298200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:99282800-99299400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:99285200-99298600	Weak transcription	Right Atrium	heart
12	chr10:99286200-99299200	Weak transcription	Ovary	ovary
13	chr10:99286400-99293800	Weak transcription	Psoas Muscle	Psoas
14	chr10:99287200-99298200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:99290000-99298200	Weak transcription	Adipose Nuclei	Adipose
16	chr10:99290000-99299400	Weak transcription	Right Ventricle	heart
17	chr10:99291000-99294200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr10:99291000-99295000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:99291000-99295000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:99291200-99295000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:99291400-99294200	Enhancers	Placenta Amnion	Placenta Amnion
22	chr10:99291400-99295000	Enhancers	Fetal Muscle Trunk	muscle
23	chr10:99291600-99294200	Enhancers	Fetal Muscle Leg	muscle
24	chr10:99291800-99295000	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr10:99291800-99297800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr10:99292000-99298200	Weak transcription	HUVEC	blood vessel
27	chr10:99292000-99298200	Weak transcription	NHDF-Ad	bronchial
28	chr10:99292000-99298600	Weak transcription	Lung	lung
29	chr10:99292400-99294600	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr10:99292400-99295000	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr10:99292400-99295000	Enhancers	Brain Anterior Caudate	brain
32	chr10:99292600-99294000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr10:99292600-99294000	Enhancers	HSMM	muscle
34	chr10:99292600-99294200	Enhancers	Placenta	Placenta
35	chr10:99292600-99294200	Enhancers	NH-A	brain
36	chr10:99292600-99294800	Enhancers	Esophagus	oesophagus
37	chr10:99292600-99295000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr10:99292600-99295000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr10:99292800-99294000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr10:99292800-99294600	Enhancers	HSMMtube	muscle
41	chr10:99292800-99298200	Weak transcription	NHEK	skin
42	chr10:99293000-99294000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr10:99293000-99294000	Weak transcription	Brain Hippocampus Middle	brain
44	chr10:99293000-99295000	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr10:99293000-99295000	Enhancers	Brain Substantia Nigra	brain
46	chr10:99293200-99293800	Enhancers	NHLF	lung
47	chr10:99293200-99294000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr10:99293200-99294400	Weak transcription	Brain Cingulate Gyrus	brain
49	chr10:99293200-99298200	Weak transcription	A549	lung
50	chr10:99293200-99298600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links