Variant report

Variant	rs12775868
Chromosome Location	chr10:99320537-99320538
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10748699	0.81[EUR][1000 genomes]
rs10882957	0.93[ASN][1000 genomes]
rs10882961	0.81[EUR][1000 genomes]
rs10882962	0.81[EUR][1000 genomes]
rs10882963	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882965	0.81[EUR][1000 genomes]
rs10882967	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1107517	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1107518	0.94[ASN][1000 genomes]
rs11189267	0.90[ASN][1000 genomes]
rs11189270	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11189274	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11189275	0.81[EUR][1000 genomes]
rs11189278	0.81[EUR][1000 genomes]
rs11189280	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11189284	0.85[ASN][1000 genomes]
rs11511362	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11528108	0.81[EUR][1000 genomes]
rs11528109	0.81[EUR][1000 genomes]
rs11814566	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12243136	0.90[EUR][1000 genomes]
rs12355384	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12357750	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12415338	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12766074	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12767760	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12774288	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12779451	0.84[AMR][1000 genomes]
rs12783481	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1417408	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1572860	0.81[EUR][1000 genomes]
rs17108059	0.82[EUR][1000 genomes]
rs3814554	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4244325	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4244326	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4635019	0.81[EUR][1000 genomes]
rs4919108	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4919109	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66521603	0.82[ASN][1000 genomes]
rs68084394	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7077976	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7094973	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7342022	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7475470	0.81[EUR][1000 genomes]
rs7475851	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7902642	0.80[EUR][1000 genomes]
rs7908668	0.81[EUR][1000 genomes]
rs7911122	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv7508	chr10:99285375-99330501	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv1047359	chr10:99306501-99369013	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99303000-99327600	Weak transcription	Aorta	Aorta
2	chr10:99303200-99327600	Weak transcription	Pancreas	Pancrea
3	chr10:99303800-99327800	Weak transcription	Ovary	ovary
4	chr10:99310400-99327600	Weak transcription	Lung	lung
5	chr10:99310400-99327800	Weak transcription	Right Ventricle	heart
6	chr10:99310800-99320600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:99310800-99326400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:99310800-99327600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr10:99310800-99327600	Weak transcription	Spleen	Spleen
10	chr10:99311400-99327600	Weak transcription	Left Ventricle	heart
11	chr10:99311400-99328800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:99313800-99321800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:99313800-99327400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr10:99313800-99327600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:99313800-99327600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr10:99313800-99327600	Weak transcription	NHLF	lung
17	chr10:99313800-99329800	Weak transcription	Gastric	stomach
18	chr10:99313800-99330600	Weak transcription	Brain Angular Gyrus	brain
19	chr10:99314000-99321600	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr10:99314000-99326200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:99314800-99320800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr10:99315000-99321600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:99315000-99329000	Weak transcription	HSMMtube	muscle
24	chr10:99316400-99325800	Weak transcription	NHEK	skin
25	chr10:99317200-99320800	Weak transcription	Liver	Liver
26	chr10:99319200-99321600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:99319200-99321600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr10:99319800-99321200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr10:99320200-99320600	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr10:99320200-99321200	Active TSS	Osteobl	bone
31	chr10:99320400-99320600	Active TSS	Muscle Satellite Cultured Cells	--
32	chr10:99320400-99320800	Active TSS	GM12878-XiMat	blood
33	chr10:99320400-99320800	Active TSS	HepG2	liver
34	chr10:99320400-99320800	Active TSS	HSMM	muscle
35	chr10:99320400-99321000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr10:99320400-99321000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr10:99320400-99321000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr10:99320400-99321200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr10:99320400-99321200	Active TSS	Adipose Nuclei	Adipose

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