Variant report

Variant	rs17108059
Chromosome Location	chr10:99308118-99308119
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99299652..99304961-chr10:99307189..99311108,10	MCF-7	breast:
2	chr10:99275110..99276850-chr10:99307857..99310053,2	MCF-7	breast:
3	chr10:99307089..99309387-chr10:99309451..99312013,2	MCF-7	breast:
4	chr10:99255761..99258218-chr10:99306296..99308744,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155229	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10748698	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10748699	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10748700	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882956	0.90[ASN][1000 genomes]
rs10882957	0.94[EUR][1000 genomes]
rs10882959	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882961	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882962	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882963	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10882965	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882966	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1107517	0.84[EUR][1000 genomes]
rs1107518	0.94[EUR][1000 genomes]
rs11189266	0.90[ASN][1000 genomes]
rs11189270	0.86[EUR][1000 genomes]
rs11189274	0.85[EUR][1000 genomes]
rs11189275	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11189278	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11511362	0.86[EUR][1000 genomes]
rs11528108	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11528109	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11814566	0.86[EUR][1000 genomes]
rs12219064	0.95[ASN][1000 genomes]
rs12221474	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12243136	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12355384	0.82[EUR][1000 genomes]
rs12415338	0.84[EUR][1000 genomes]
rs12766074	0.85[EUR][1000 genomes]
rs12774288	0.83[EUR][1000 genomes]
rs12775868	0.82[EUR][1000 genomes]
rs12783481	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1417408	0.82[EUR][1000 genomes]
rs1475757	0.80[ASN][1000 genomes]
rs1572860	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3814554	0.82[EUR][1000 genomes]
rs4635019	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4919108	0.85[EUR][1000 genomes]
rs4919109	0.84[EUR][1000 genomes]
rs7077211	0.94[ASN][1000 genomes]
rs7077976	0.84[EUR][1000 genomes]
rs7342022	0.87[EUR][1000 genomes]
rs7475470	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7475851	0.84[EUR][1000 genomes]
rs7902642	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7921253	0.80[ASN][1000 genomes]
rs7921278	0.90[ASN][1000 genomes]
rs7921505	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv7508	chr10:99285375-99330501	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv1047359	chr10:99306501-99369013	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99300600-99309200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr10:99302200-99308600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:99302600-99308800	Weak transcription	Fetal Thymus	thymus
4	chr10:99303000-99327600	Weak transcription	Aorta	Aorta
5	chr10:99303200-99308400	Weak transcription	HepG2	liver
6	chr10:99303200-99308800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:99303200-99309000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr10:99303200-99327600	Weak transcription	Pancreas	Pancrea
9	chr10:99303400-99308800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:99303400-99309600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr10:99303600-99308800	Weak transcription	Placenta	Placenta
12	chr10:99303600-99308800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr10:99303600-99309000	Weak transcription	Fetal Heart	heart
14	chr10:99303600-99309400	Weak transcription	Fetal Lung	lung
15	chr10:99303800-99308600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:99303800-99308600	Weak transcription	Brain Anterior Caudate	brain
17	chr10:99303800-99308800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:99303800-99309000	Weak transcription	A549	lung
19	chr10:99303800-99309400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:99303800-99309400	Weak transcription	Colon Smooth Muscle	Colon
21	chr10:99303800-99327800	Weak transcription	Ovary	ovary
22	chr10:99304000-99308600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr10:99304000-99308600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr10:99304200-99309200	Weak transcription	NHDF-Ad	bronchial
25	chr10:99304200-99313400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr10:99304400-99308600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr10:99304400-99308800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr10:99305600-99309800	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr10:99305800-99309200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr10:99306000-99308200	Enhancers	HSMM	muscle
31	chr10:99306000-99309400	Weak transcription	Lung	lung
32	chr10:99306000-99311000	Enhancers	Fetal Muscle Leg	muscle
33	chr10:99306200-99310000	Enhancers	Brain Cingulate Gyrus	brain
34	chr10:99306200-99310600	Enhancers	Fetal Muscle Trunk	muscle
35	chr10:99306400-99310800	Enhancers	Brain Substantia Nigra	brain
36	chr10:99306400-99311000	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr10:99306400-99311200	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr10:99306400-99311400	Enhancers	Psoas Muscle	Psoas
39	chr10:99306600-99310800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr10:99306600-99311400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr10:99306800-99308200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:99306800-99310400	Enhancers	Right Ventricle	heart
43	chr10:99306800-99310600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr10:99306800-99310600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr10:99306800-99310800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:99307000-99308200	Enhancers	NHLF	lung
47	chr10:99307000-99309200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr10:99307000-99309600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr10:99307000-99309800	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr10:99307000-99311400	Enhancers	Cortex derived primary cultured neurospheres	brain

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