Variant report

Variant	rs7342022
Chromosome Location	chr10:99333840-99333841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:99204433..99207263-chr10:99333172..99335779,3	MCF-7	breast:
2	chr10:99255590..99258774-chr10:99331777..99334688,4	MCF-7	breast:
3	chr10:99332396..99334042-chr10:99392626..99394470,2	K562	blood:
4	chr10:99275538..99279686-chr10:99333593..99336127,3	MCF-7	breast:
5	chr10:99329733..99337149-chr10:99338392..99346753,19	MCF-7	breast:
6	chr10:99256533..99260506-chr10:99329939..99335950,10	MCF-7	breast:
7	chr10:99333671..99336639-chr10:99408320..99410860,2	MCF-7	breast:
8	chr10:99328694..99331523-chr10:99333360..99336351,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000171311	Chromatin interaction
ENSG00000165886	Chromatin interaction
ENSG00000171307	Chromatin interaction
ENSG00000241935	Chromatin interaction
ENSG00000155229	Chromatin interaction
ENSG00000249967	Chromatin interaction
ENSG00000171160	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1018727	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10748698	0.82[EUR][1000 genomes]
rs10748699	0.86[EUR][1000 genomes]
rs10748700	0.86[EUR][1000 genomes]
rs10882957	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882959	0.84[EUR][1000 genomes]
rs10882961	0.86[EUR][1000 genomes]
rs10882962	0.88[EUR][1000 genomes]
rs10882963	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882965	0.88[EUR][1000 genomes]
rs10882966	0.85[EUR][1000 genomes]
rs10882967	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1107517	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1107518	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11189267	0.82[ASN][1000 genomes]
rs11189270	0.83[ASN][1000 genomes]
rs11189274	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11189275	0.88[EUR][1000 genomes]
rs11189278	0.88[EUR][1000 genomes]
rs11189280	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11189284	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11511362	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11528108	0.89[EUR][1000 genomes]
rs11528109	0.89[EUR][1000 genomes]
rs11814566	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12243136	0.80[EUR][1000 genomes]
rs12355384	0.85[ASN][1000 genomes]
rs12357750	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12415338	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12766074	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12767760	0.81[ASN][1000 genomes]
rs12774288	0.82[ASN][1000 genomes]
rs12775868	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12783481	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1417408	0.83[ASN][1000 genomes]
rs1475757	0.86[EUR][1000 genomes]
rs1572860	0.87[EUR][1000 genomes]
rs17108059	0.87[EUR][1000 genomes]
rs2282373	0.80[EUR][1000 genomes]
rs3814554	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4244325	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4244326	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4635019	0.88[EUR][1000 genomes]
rs4919108	0.83[ASN][1000 genomes]
rs4919109	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs68084394	0.83[ASN][1000 genomes]
rs7077976	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7094973	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7475470	0.88[EUR][1000 genomes]
rs7475851	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7902642	0.91[EUR][1000 genomes]
rs7908668	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7911122	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv1047359	chr10:99306501-99369013	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99321200-99334600	Weak transcription	HepG2	liver
2	chr10:99325600-99334600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:99326000-99334200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr10:99326400-99334200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr10:99327000-99334600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr10:99327200-99334600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:99327800-99334400	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:99329200-99334000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr10:99329600-99334600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:99329800-99336000	Enhancers	Placenta Amnion	Placenta Amnion
11	chr10:99330000-99335400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr10:99330800-99334200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:99330800-99334400	Weak transcription	NHLF	lung
14	chr10:99330800-99334600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr10:99330800-99335000	Weak transcription	Ovary	ovary
16	chr10:99330800-99335400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
17	chr10:99330800-99336200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr10:99330800-99336200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:99330800-99336200	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr10:99331000-99337200	Enhancers	Fetal Heart	heart
21	chr10:99331200-99334400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr10:99331200-99334400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
23	chr10:99331400-99336000	Enhancers	Fetal Muscle Leg	muscle
24	chr10:99331400-99336200	Enhancers	Hela-S3	cervix
25	chr10:99331800-99334200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:99331800-99334400	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr10:99331800-99334800	Enhancers	Stomach Smooth Muscle	stomach
28	chr10:99332000-99335400	Enhancers	HMEC	breast
29	chr10:99332000-99335600	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr10:99332000-99335800	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr10:99332200-99334600	Weak transcription	Fetal Intestine Large	intestine
32	chr10:99332200-99335000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr10:99332200-99336200	Enhancers	NHEK	skin
34	chr10:99332400-99334200	Weak transcription	NH-A	brain
35	chr10:99332400-99335000	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr10:99332600-99334000	Weak transcription	Lung	lung
37	chr10:99332600-99334200	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr10:99332600-99334400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr10:99332600-99334400	Weak transcription	Stomach Mucosa	stomach
40	chr10:99332600-99334800	Weak transcription	Fetal Intestine Small	intestine
41	chr10:99332600-99334800	Weak transcription	Right Atrium	heart
42	chr10:99332600-99335200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr10:99332600-99335600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr10:99332600-99338200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr10:99332800-99334000	Active TSS	Left Ventricle	heart
46	chr10:99332800-99334200	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr10:99332800-99334200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr10:99332800-99334200	Weak transcription	Aorta	Aorta
49	chr10:99332800-99334200	Weak transcription	Liver	Liver
50	chr10:99332800-99334200	Weak transcription	Pancreas	Pancrea

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