Variant report

Variant	rs1107518
Chromosome Location	chr10:99299860-99299861
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99293705..99296189-chr10:99297526..99301633,5	MCF-7	breast:
2	chr10:99204676..99206616-chr10:99299174..99301378,2	MCF-7	breast:
3	chr10:99298484..99301202-chr10:99302783..99304402,2	MCF-7	breast:
4	chr10:99299652..99304961-chr10:99307189..99311108,10	MCF-7	breast:
5	chr10:99298137..99300363-chr10:99331501..99333055,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165887	Chromatin interaction
ENSG00000171311	Chromatin interaction
ENSG00000171307	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10748698	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10748699	0.95[EUR][1000 genomes]
rs10748700	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10882957	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882959	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10882961	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10882962	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10882963	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882965	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10882966	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10882967	0.85[ASN][1000 genomes]
rs1107517	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11189267	0.94[ASN][1000 genomes]
rs11189270	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11189274	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11189275	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11189278	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11189280	0.92[ASN][1000 genomes]
rs11189284	0.86[ASN][1000 genomes]
rs11511362	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11528108	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11528109	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11814566	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12243136	0.84[EUR][1000 genomes]
rs12355384	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12357750	0.92[ASN][1000 genomes]
rs12415338	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12766074	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12767760	0.94[ASN][1000 genomes]
rs12774288	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12775868	0.94[ASN][1000 genomes]
rs12783481	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1417408	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1572860	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17108059	0.94[EUR][1000 genomes]
rs3814554	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4244325	0.84[ASN][1000 genomes]
rs4244326	0.82[ASN][1000 genomes]
rs4635019	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4919108	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4919109	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs68084394	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7077976	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7094973	0.84[ASN][1000 genomes]
rs7342022	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7475470	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7475851	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7902642	0.91[EUR][1000 genomes]
rs7911122	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv7508	chr10:99285375-99330501	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	esv992861	chr10:99298852-99305974	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99277800-99301800	Weak transcription	Gastric	stomach
2	chr10:99278000-99302600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr10:99278400-99301800	Weak transcription	Spleen	Spleen
4	chr10:99278600-99300200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:99281400-99302200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:99282200-99301800	Weak transcription	Pancreas	Pancrea
7	chr10:99293200-99301800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:99293400-99300400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:99294400-99301800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr10:99295400-99302400	Weak transcription	Fetal Intestine Small	intestine
11	chr10:99297000-99300400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:99297200-99300000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:99297200-99303600	Enhancers	Placenta	Placenta
14	chr10:99297400-99300800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:99297400-99302200	Enhancers	HSMMtube	muscle
16	chr10:99297800-99300000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:99297800-99300800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:99297800-99301600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:99297800-99301800	Enhancers	Muscle Satellite Cultured Cells	--
20	chr10:99297800-99301800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:99297800-99301800	Enhancers	Osteobl	bone
22	chr10:99297800-99302800	Enhancers	NH-A	brain
23	chr10:99298200-99300000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:99298200-99300400	Enhancers	NHEK	skin
25	chr10:99298200-99301200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr10:99298200-99301800	Enhancers	A549	lung
27	chr10:99298200-99301800	Enhancers	HSMM	muscle
28	chr10:99298200-99301800	Enhancers	NHDF-Ad	bronchial
29	chr10:99298200-99301800	Enhancers	NHLF	lung
30	chr10:99298200-99302400	Enhancers	HMEC	breast
31	chr10:99298200-99302600	Enhancers	Adipose Nuclei	Adipose
32	chr10:99298200-99302800	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr10:99298200-99302800	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr10:99298200-99302800	Enhancers	HUVEC	blood vessel
35	chr10:99298200-99304200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr10:99298200-99304200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr10:99298200-99304200	Enhancers	Brain Hippocampus Middle	brain
38	chr10:99298400-99300800	Enhancers	Brain Cingulate Gyrus	brain
39	chr10:99298400-99302800	Enhancers	Brain Angular Gyrus	brain
40	chr10:99298400-99303600	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr10:99298400-99304000	Enhancers	Placenta Amnion	Placenta Amnion
42	chr10:99298400-99304400	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr10:99298600-99300800	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr10:99298600-99300800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr10:99298600-99300800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr10:99298600-99300800	Enhancers	Right Atrium	heart
47	chr10:99298600-99301200	Enhancers	Lung	lung
48	chr10:99298600-99303800	Enhancers	Fetal Muscle Trunk	muscle
49	chr10:99298600-99304000	Enhancers	Fetal Muscle Leg	muscle
50	chr10:99298800-99300000	Weak transcription	Brain Substantia Nigra	brain

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