Variant report

Variant	rs11528109
Chromosome Location	chr10:99323836-99323837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10748698	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10748699	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10748700	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882956	0.88[ASN][1000 genomes]
rs10882957	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10882959	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882961	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882962	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882963	0.92[EUR][1000 genomes]
rs10882965	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882966	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1107517	0.80[EUR][1000 genomes]
rs1107518	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11189266	0.88[ASN][1000 genomes]
rs11189270	0.84[EUR][1000 genomes]
rs11189274	0.84[EUR][1000 genomes]
rs11189275	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11189278	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11511362	0.84[EUR][1000 genomes]
rs11528108	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11814566	0.84[EUR][1000 genomes]
rs12219064	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12221474	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12243136	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12415338	0.85[EUR][1000 genomes]
rs12766074	0.83[EUR][1000 genomes]
rs12775868	0.81[EUR][1000 genomes]
rs12783481	0.83[EUR][1000 genomes]
rs1417408	0.81[EUR][1000 genomes]
rs1475757	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1572860	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17108059	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3814554	0.84[EUR][1000 genomes]
rs4635019	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4919108	0.84[EUR][1000 genomes]
rs4919109	0.80[EUR][1000 genomes]
rs7077211	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7077976	0.84[EUR][1000 genomes]
rs7342022	0.89[EUR][1000 genomes]
rs7475470	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7475851	0.85[EUR][1000 genomes]
rs7902642	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7921278	0.88[ASN][1000 genomes]
rs7921505	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv7508	chr10:99285375-99330501	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv1047359	chr10:99306501-99369013	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99303000-99327600	Weak transcription	Aorta	Aorta
2	chr10:99303200-99327600	Weak transcription	Pancreas	Pancrea
3	chr10:99303800-99327800	Weak transcription	Ovary	ovary
4	chr10:99310400-99327600	Weak transcription	Lung	lung
5	chr10:99310400-99327800	Weak transcription	Right Ventricle	heart
6	chr10:99310800-99326400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:99310800-99327600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr10:99310800-99327600	Weak transcription	Spleen	Spleen
9	chr10:99311400-99327600	Weak transcription	Left Ventricle	heart
10	chr10:99311400-99328800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:99313800-99327400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:99313800-99327600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr10:99313800-99327600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr10:99313800-99327600	Weak transcription	NHLF	lung
15	chr10:99313800-99329800	Weak transcription	Gastric	stomach
16	chr10:99313800-99330600	Weak transcription	Brain Angular Gyrus	brain
17	chr10:99314000-99326200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:99315000-99329000	Weak transcription	HSMMtube	muscle
19	chr10:99316400-99325800	Weak transcription	NHEK	skin
20	chr10:99321000-99327600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr10:99321000-99327800	Weak transcription	Fetal Muscle Leg	muscle
22	chr10:99321000-99329000	Weak transcription	NHDF-Ad	bronchial
23	chr10:99321000-99330600	Weak transcription	A549	lung
24	chr10:99321200-99327600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr10:99321200-99327800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:99321200-99327800	Weak transcription	Adipose Nuclei	Adipose
27	chr10:99321200-99327800	Weak transcription	HSMM	muscle
28	chr10:99321200-99328000	Weak transcription	Liver	Liver
29	chr10:99321200-99329000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr10:99321200-99329000	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr10:99321200-99329000	Weak transcription	Osteobl	bone
32	chr10:99321200-99334600	Weak transcription	HepG2	liver
33	chr10:99321400-99326200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr10:99321600-99327800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr10:99321800-99327800	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr10:99322000-99326000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr10:99322000-99326400	Weak transcription	GM12878-XiMat	blood
38	chr10:99322000-99333000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr10:99322200-99327600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr10:99322200-99328400	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr10:99322600-99327600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr10:99323400-99325000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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